Module 01: Scientific Curiosity and Motivation
Everything needed to run Module 01 as a taught session: prep, timing, materials, misconceptions, rubric.
Session Kits
One ready-to-run page per module: prep checklist, timing, materials, misconceptions, rubric.
Each kit is the single page to open ten minutes before walking in. Everything in it already existed — capability target, run of show, worksheet, rubric, rendered deck — but was spread across five locations. These assemble it.
Kits are generated from the module pages. To change one, edit
modules/moduleNN.md and re-run scripts/generate_module_teaching_materials.rb.
For the reasoning behind the session design — why half of contact time should be learner judgement rather than explanation, how to differentiate across the learner personas, and what to do when a session goes wrong — see the Facilitator Guide.
Module 02: Research Foundations and the Hidden Curriculum
Everything needed to run Module 02 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 03: Python and Jupyter for Neuroscience
Everything needed to run Module 03 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 04: Neuroanatomy for Connectomics
Everything needed to run Module 04 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 05: Electron Microscopy and Image Basics
Everything needed to run Module 05 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 06: Segmentation 101
Everything needed to run Module 06 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 07: Proofreading and Quality Control
Everything needed to run Module 07 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 08: Hypothesis Testing in Connectomics
Everything needed to run Module 08 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 09: Neuron Morphology and Skeletonization
Everything needed to run Module 09 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 10: Network Science and Graph Representation
Everything needed to run Module 10 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 11: Synapses and Circuit Logic
Everything needed to run Module 11 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 12: Big Data in Connectomics
Everything needed to run Module 12 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 13: Machine Learning in Neuroscience
Everything needed to run Module 13 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 14: Computer Vision for EM
Everything needed to run Module 14 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 15: LLMs for Patch Analysis
Everything needed to run Module 15 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 16: Scientific Visualization for Connectomics
Everything needed to run Module 16 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 17: Scientific Writing for Connectomics
Everything needed to run Module 17 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 18: Data Cleaning and Preprocessing
Everything needed to run Module 18 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 19: Peer Review and Scientific Ethics
Everything needed to run Module 19 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 20: Statistical Models and Inference for Connectomics
Everything needed to run Module 20 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 21: Reproducibility and FAIR Principles in Connectomics
Everything needed to run Module 21 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 22: Scientific Writing and Presentation
Everything needed to run Module 22 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 23: Posters, Abstracts, and Conferences
Everything needed to run Module 23 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 24: Career Pathways and Graduate School Preparation
Everything needed to run Module 24 as a taught session: prep, timing, materials, misconceptions, rubric.
Module 25: Portfolio, Feedback, and Final Project
Everything needed to run Module 25 as a taught session: prep, timing, materials, misconceptions, rubric.