Google Research (FAFB & H01)

Access FlyWire and the H01 human cortex dataset using caveclient.

• pip install caveclient
• CAVEclient Basics
• Advanced Queries

Allen Institute MICrONS

Download the MICrONS dataset via the allensdk Python library.

• pip install allensdk
• MICrONS Data Access
• Visualizing Meshes

Janelia Hemibrain

Work with the hemibrain connectome using neuprint-python.

• pip install neuprint-python
• neuPrint Starter Guide
• Common Recipes

bossDB Resources

Explore a variety of EM volumes hosted on bossDB using the intern client.

• pip install intern
• bossDB Cutout Example

General Tools

Visualize data in-browser with Neuroglancer or analyze it locally with Napari.